![]() Evolutionary information encoded in multiple sequence alignments is known to greatly improve sequence-based predictions. Hence, traditional sequence-based prediction methods focusing on a single residue (or a short window of residues) at a time may have difficulties in identifying and clustering the residues constituting a functional site, especially when a protein has multiple functions. Residues forming an active site, whether it is a catalytic center or interaction interface, are frequently distant in a protein sequence. Proteins generally perform their function in a folded state. ![]()
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